packages

OncoMark

Availability: PyPI

The OncoMark package is designed to systematically quantify cancer hallmark activity using transcriptomics data from routine tumor biopsies. It supports applications in oncology research, personalized medicine, and biomarker discovery.

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pygeneconverter

Availability: PyPI

The pygeneconverter package provides utilities for converting Ensembl IDs to HUGO gene symbols and vice versa. It also annotates genes with their corresponding types such as lincRNA, miRNA, etc., making it valuable for bioinformatics and computational biology workflows.

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ACSCeND

Availability: PyPI

The ACSCeND package provides tools to analyze and process stem cell transcriptomics data. It includes two deep learning modules for predicting stem cell subtypes and deconvoluting bulk RNA-seq data for enhanced biological interpretation.

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